miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|148317615|gb|ES577508.1|ES577508 TAGTTCGGGGGTTTAGCGATAACGGCCCGGCTACCAAAGATCTATCTAGAAACTTGGATACTTGTCGGAAGAATTATTAT
TTATTAATACTAACGCATATTTCTTTTACATTTGAGAGCAATATAAACAAGATCACCGAGAATGAAGATCTGGTCTTCTA
TAATTCTGATGGCTGCCCTTTTGCTAATGACATCACTGGCAGCTGACTTTGAAGAAGAGGACGATGCTGAGGATGGGATA
GTAGAGGTTGAAGATGAAGTTGTTTTTGAAAAAGAAAGGCCTGTTTATGAAAGACCTGTACCAAGTGGTGCAACATATTT
TCTCGAGCCATTTGATACAAGGGCTGAATTTTTAAAGAGATGGGTTCAATCACAAGCCAAAAAAGATGGCGCTGAAGATC
ACCTTGCTAAGTATGATGGTAAACGGGCTGTTGAAGAAGCAAGAGAAAATCCAATAATCAGAGATTTGGGCCTTATTCTT
AAGACCAAGGCAAAGCATCATGCTATCGCAGCAAAGCTGGATAAACCTTTTGATTTTAATGGGAAACCATTGATTGTTCA
GTATGAAGTTAAATTTCAAAATGGCATAGACTGTGGTGGTGCATACATCAAACTGCTCTCAAAAGGGGAACAGCCGCTCA
ATCTGAAAGCATTCACTGATAAGACACCCTATACTATTATGTTTGGACCTGACAAATGAGGCAATGATCATAAGCTCCAT
TTTATATTCCGTCACAAGAACCCCAAAACTGGACAATATGAGAAAAAGCATGCTGAGAAGCCAACTGCCAAGCTGGAGAA
TTTCTTCACTGATAGAAAGACTCACCTGTATACTTTGATTGTAAATCCAGACAACACATATGAAGTTAAAGTAGACAATG
GAC




Most similar to sp|P27824|CALX_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P27824|CALX_HUMAN Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2
          Length = 592

 Score =  237 bits (605), Expect = 7e-62
 Identities = 117/197 (59%), Positives = 143/197 (72%)
 Frame = +1

Query: 286 YERPVPSGATYFLEPFDTRAEFLKRWVQSQAKKDGAEDHLAKYDGKRAVEEARENPIIRD 465
           Y+ PVP+G  YF + FD     L  W+ S+AKKD  +D +AKYDGK  VEE +E+ +  D
Sbjct: 60  YKAPVPTGEVYFADSFDRGT--LSGWILSKAKKDDTDDEIAKYDGKWEVEEMKESKLPGD 117

Query: 466 LGLXXXXXXXXXXXXXXXDKPFDFNGKPLIVQYEVKFQNGIDCGGAYIKLLSKGEQPLNL 645
            GL               +KPF F+ KPLIVQYEV FQNGI+CGGAY+KLLSK  + LNL
Sbjct: 118 KGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPE-LNL 176

Query: 646 KAFTDKTPYTIMFGPDK*GNDHKLHFIFRHKNPKTGQYEKKHAEKPTAKLENFFTDRKTH 825
             F DKTPYTIMFGPDK G D+KLHFIFRHKNPKTG YE+KHA++P A L+ +FTD+KTH
Sbjct: 177 DQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKHAKRPDADLKTYFTDKKTH 236

Query: 826 LYTLIVNPDNTYEVKVD 876
           LYTLI+NPDN++E+ VD
Sbjct: 237 LYTLILNPDNSFEILVD 253